mypackage.MyPyroModule¶

class mypackage.MyPyroModule(n_input, n_latent, n_hidden, n_layers)[source]¶

Skeleton Variational auto-encoder Pyro model.

Here we implement a basic version of scVI’s underlying VAE [Lopez18]. This implementation is for instructional purposes only.

Parameters

n_input : intint: Number of input genes
n_latent : intint: Dimensionality of the latent space
n_hidden : intint: Number of nodes per hidden layer
n_layers : intint: Number of hidden layers used for encoder and decoder NNs

Methods