mypackage.MyModel.get_elbo¶
-
MyModel.
get_elbo
(adata=None, indices=None, batch_size=None)¶ Return the ELBO for the data.
The ELBO is a lower bound on the log likelihood of the data used for optimization of VAEs. Note, this is not the negative ELBO, higher is better.
- Parameters
- adata :
AnnData
|None
Optional
[AnnData
] (default:None
) AnnData object with equivalent structure to initial AnnData. If None, defaults to the AnnData object used to initialize the model.
- indices :
Sequence
[int
] |None
Optional
[Sequence
[int
]] (default:None
) Indices of cells in adata to use. If None, all cells are used.
- batch_size :
int
|None
Optional
[int
] (default:None
) Minibatch size for data loading into model. Defaults to scvi.settings.batch_size.
- adata :
- Return type