mypackage.MyPyroModel.get_latent

MyPyroModel.get_latent(adata=None, indices=None, batch_size=None)

Return the latent representation for each cell.

This is denoted as \(z_n\) in our manuscripts. :type adata: AnnData | NoneOptional[AnnData] (default: None) :param adata: AnnData object with equivalent structure to initial AnnData. If None, defaults to the

AnnData object used to initialize the model.

Parameters

indices : Sequence[int] | NoneOptional[Sequence[int]] (default: None)

Indices of cells in adata to use. If None, all cells are used.

batch_size : int | NoneOptional[int] (default: None)

Minibatch size for data loading into model. Defaults to scvi.settings.batch_size.

Returns

-latent_representation (ndarray) Low-dimensional representation for each cell